Transcript: lnc-ST6GALNAC6-1:7

Basic information

LNCipedia transcript ID: lnc-ST6GALNAC6-1:7 
LNCipedia gene ID: lnc-ST6GALNAC6-1
Location (hg38): chr9:127867864-127886787
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1071 bp
Exons: 8
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000476274.2; RP11-203J24.9-003; OTTHUMT00000404005.1; ENST00000476274.6
Alternative gene names: ENSG00000257524.1; RP11-203J24.9; OTTHUMG00000169436.1; ENSG00000257524.5; AL157935.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2604.1256 coding 
CPAT coding probability 99.90% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ST6GALNAC6-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AK1-1:1
4.0 lnc-ST6GALNAC6-1:7
4.1 lnc-ST6GALNAC6-1:7
5.0 lnc-ST6GALNAC6-1:7
5.1 lnc-SPOUT1-43:6
5.2 lnc-ST6GALNAC6-1:7