Transcript: lnc-SSR1-4:1

Basic information

LNCipedia transcript ID: lnc-SSR1-4:1 
LNCipedia gene ID: lnc-SSR1-4
Location (hg38): chr6:6883624-6885577
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1954 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000087267.1|ENCT00000381531.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -20.2327 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SSR1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SSR1-4:1
5.0 lnc-SSR1-4:1
5.1 lnc-ECI2-166:1
5.2 lnc-SSR1-4:1