Transcript: lnc-SRSF2-4:2

Basic information

LNCipedia transcript ID: lnc-SRSF2-4:2 
LNCipedia gene ID: lnc-SRSF2-4
Ensembl Gene ID: ENSG00000263718
Ensembl Transcript ID: ENST00000581657
Location (hg38): chr17:77257737-77274326
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 749 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000581657.1; RP11-285E9.6-002; OTTHUMT00000438607.1; NONHSAT056133
Alternative gene names: ENSG00000263718.1; RP11-285E9.6; OTTHUMG00000177704.1; ENSG00000263718.2; AC068594.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.6696 non-coding 
CPAT coding probability 24.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SRSF2-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SRSF2-4:2
4.0 lnc-SRSF2-4:2
4.1 lnc-SRSF2-4:2
5.0 lnc-SRSF2-4:2
5.1 lnc-ST6GALNAC2-21:2
5.2 lnc-SRSF2-4:2