Transcript: lnc-SRPK2-1:3

Basic information

LNCipedia transcript ID: lnc-SRPK2-1:3 
LNCipedia gene ID: lnc-SRPK2-1
Location (hg38): chr7:105013326-105014069
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 626 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013917; NONHSAT122599
Alternative gene names: XLOC_006554; linc-ORC5-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.6889 non-coding 
CPAT coding probability 3.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SRPK2-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SRPK2-1:2
3.1 lnc-SRPK2-1:3
4.0 lnc-SRPK2-1:3
4.1 lnc-SRPK2-1:3
5.0 lnc-SRPK2-1:3
5.1 lnc-POLR2J2-25:9
5.2 lnc-SRPK2-1:3