Transcript: lnc-SREK1-1:5

Basic information

LNCipedia transcript ID: lnc-SREK1-1:5 
LNCipedia gene ID: lnc-SREK1-1
Ensembl Gene ID: ENSG00000251391
Ensembl Transcript ID: ENST00000510964
Location (hg38): chr5:66298468-66322944
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 445 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510964; ENST00000510964.2; RP11-305P14.1-001; OTTHUMT00000377188.1
Alternative gene names: ENSG00000251391; RP11-305P14.1; ENSG00000251391.3; OTTHUMG00000164090.1; ENSG00000251391.4; AC113378.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -418.138 non-coding 
CPAT coding probability 42.22% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SREK1-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SREK1-1:5
3.1 lnc-SREK1-1:5
4.0 lnc-SREK1-1:5
4.1 lnc-SREK1-1:5
5.0 lnc-SREK1-1:5
5.1 lnc-NLN-20:5
5.2 lnc-SREK1-1:5