Transcript: lnc-SPRY1-11:29

Basic information

LNCipedia transcript ID: lnc-SPRY1-11:29 
LNCipedia gene ID: lnc-SPRY1-11
Location (hg38): chr4:123650267-123930406
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 669 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000249464.1|ENST00000508111.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -238.814 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPRY1-11:29 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01091:36
5.0 LINC01091:36
5.1 lnc-FGF2-11:30
5.2 lnc-SPRY1-11:29