Transcript: lnc-SPRY1-11:2

Basic information

LNCipedia transcript ID: lnc-SPRY1-11:2 
LNCipedia gene ID: lnc-SPRY1-11
Location (hg38): chr4:123490008-123496955
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 720 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008881; NONHSAT098186
Alternative gene names: XLOC_003680; linc-FAT4-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.7941 non-coding 
CPAT coding probability 19.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPRY1-11:2 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPRY1-1:1
3.1 lnc-SPRY1-1:1
4.0 lnc-SPRY1-1:1
4.1 LINC01091:13
5.0 LINC01091:13
5.1 lnc-FGF2-11:3
5.2 lnc-SPRY1-11:2