Transcript: lnc-SPPL3-3:3

Basic information

LNCipedia transcript ID: lnc-SPPL3-3:3 
LNCipedia gene ID: lnc-SPPL3-3
Ensembl Gene ID: ENSG00000256364
Ensembl Transcript ID: ENST00000541383
Location (hg38): chr12:120697124-120699501
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 575 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000541383.1; RP11-173P15.3-001; OTTHUMT00000402855.1; NONHSAT031192
Alternative gene names: ENSG00000256364.1; RP11-173P15.3; OTTHUMG00000169200.1; AC069234.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.1306 non-coding 
CPAT coding probability 2.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPPL3-3:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPPL3.1-3:2
4.0 lnc-SPPL3.1-3:2
4.1 lnc-SPPL3.1-3:2
5.0 lnc-SPPL3.1-3:2
5.1 lnc-SRSF9-8:3
5.2 lnc-SPPL3-3:3