Transcript: lnc-SPOP-2:1

Basic information

LNCipedia transcript ID: lnc-SPOP-2:1 
LNCipedia gene ID: lnc-SPOP-2
Ensembl Gene ID: ENSG00000249906
Ensembl Transcript ID: ENST00000514506
RefSeq ID: NR_103773
Location (hg38): chr17:49505657-49574064
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1221 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000514506.1; RP5-1029K10.2-001; OTTHUMT00000365157.1; NONHSAT054542; NR_103773; NR_103773.1
Alternative gene names: ENSG00000249906.1; RP5-1029K10.2; OTTHUMG00000161498.1; AC006487.1; LOC100288866


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 177.2024 coding 
CPAT coding probability 74.79% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SPOP-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPOP-2:1
4.0 lnc-SPOP-2:1
4.1 lnc-SPOP-2:1
5.0 lnc-SPOP-2:1
5.1 lnc-ZNF652-7:1
5.2 lnc-SPOP-2:1