Transcript: lnc-SPON2-1:12

Basic information

LNCipedia transcript ID: lnc-SPON2-1:12 
LNCipedia gene ID: lnc-SPON2-1
Location (hg38): chr4:1185784-1187753
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1970 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc003gcp_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.2404 non-coding 
CPAT coding probability 4.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPON2-1:12 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC092535.1-1:11
4.0 lnc-SPON2-1:12
4.1 lnc-SPON2-1:12
5.0 lnc-SPON2-1:12
5.1 lnc-PSAPL1-90:11
5.2 lnc-SPON2-1:12