Transcript: lnc-SPO11-1:3

Basic information

LNCipedia transcript ID: lnc-SPO11-1:3 
LNCipedia gene ID: lnc-SPO11-1
Ensembl Gene ID: ENSG00000226308
Ensembl Transcript ID: ENST00000426580
Location (hg38): chr20:57266802-57280485
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 252 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000426580; TCONS_00027962; ENST00000426580.1; RP4-813D12.3-002; OTTHUMT00000079830.1; NONHSAT080493
Alternative gene names: ENSG00000226308; XLOC_013583; linc-SPO11-1; RP4-813D12.3; ENSG00000226308.1; OTTHUMG00000032811.2; AL122058.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -198.0378 non-coding 
CPAT coding probability 2.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPO11-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPO11-1:3
3.1 lnc-SPO11-1:3
4.0 lnc-SPO11-1:3
4.1 lnc-SPO11-1:3
5.0 lnc-SPO11-1:3
5.1 lnc-MC3R-22:8
5.2 lnc-SPO11-1:3