Transcript: lnc-SPNS3-2:2

Basic information

LNCipedia transcript ID: lnc-SPNS3-2:2 
LNCipedia gene ID: lnc-SPNS3-2
Ensembl Gene ID: ENSG00000263165
Ensembl Transcript ID: ENST00000573371
Location (hg38): chr17:4163910-4164713
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 512 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000573371.1; RP11-810M2.2-001; OTTHUMT00000438717.1; NONHSAT145056
Alternative gene names: ENSG00000263165.1; RP11-810M2.2; OTTHUMG00000177728.1; AC087292.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.2454 non-coding 
CPAT coding probability 4.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPNS3-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CYB5D2-2:1
4.0 lnc-CYB5D2-2:1
4.1 lnc-CYB5D2-2:1
5.0 lnc-CYB5D2-2:1
5.1 lnc-RPA1-76:1
5.2 lnc-SPNS3-2:2