Transcript: lnc-SPINK4-4:9

Basic information

LNCipedia transcript ID: lnc-SPINK4-4:9 
LNCipedia gene ID: lnc-SPINK4-4
RefSeq ID: NR_108108
Location (hg38): chr9:33167859-33179983
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1185 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_108108; NR_108108.1
Alternative gene names: ; B4GALT1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.6485 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPINK4-4:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPINK4-1:7
4.0 B4GALT1-AS1:7
4.1 B4GALT1-AS1:7
5.0 B4GALT1-AS1:7
5.1 lnc-RECK-325:9
5.2 lnc-SPINK4-4:9