Transcript: lnc-SPCS2-1:1

Basic information

LNCipedia transcript ID: lnc-SPCS2-1:1 
LNCipedia gene ID: lnc-SPCS2-1
Location (hg38): chr11:74980547-74984043
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1588 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000507626; TCONS_00019151; NONHSAT022978
Alternative gene names: ENSG00000249164; XLOC_009217; linc-NEU3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.3877 non-coding 
CPAT coding probability 25.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPCS2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPCS2-1:1
3.1 lnc-SPCS2-1:1
4.0 lnc-SPCS2-1:1
4.1 lnc-SPCS2-1:1
5.0 lnc-SPCS2-1:1
5.1 lnc-TCIRG1-155:1
5.2 lnc-SPCS2-1:1