Transcript: lnc-SPATA31A6-11:1

Basic information

LNCipedia transcript ID: lnc-SPATA31A6-11:1 
LNCipedia gene ID: lnc-SPATA31A6-11
Location (hg38): chr9:41404033-41404967
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 935 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT131421; ENST00000591621.1
Alternative gene names: ENSG00000232116.2; RP11-187C18.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.2979 non-coding 
CPAT coding probability 4.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPATA31A6-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM27A-1:2
4.0 lnc-FAM27A-1:2
4.1 lnc-FAM27A-1:2
5.0 lnc-FAM27A-1:2
5.1 lnc-DCAF10-48:1
5.2 lnc-SPATA31A6-11:1