Transcript: lnc-SPATA31A3-1:1

Basic information

LNCipedia transcript ID: lnc-SPATA31A3-1:1 
LNCipedia gene ID: lnc-SPATA31A3-1
RefSeq ID: NR_026801
Location (hg38): chr9:66970162-66977317
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1883 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT131238; NR_026801; NR_026801.1
Alternative gene names: OTTHUMG00000067149; FAM74A3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.8435 non-coding 
CPAT coding probability 42.34% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SPATA31A3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM75A3-1:1
4.0 FAM74A3:1
4.1 FAM74A3:1
5.0 FAM74A3:1
5.1 lnc-ZFAND5-46:1
5.2 lnc-SPATA31A3-1:1