Transcript: lnc-SPATA17-2:1

Basic information

LNCipedia transcript ID: lnc-SPATA17-2:1 
LNCipedia gene ID: lnc-SPATA17-2
Location (hg38): chr1:217491975-217494283
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1963 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000458184.1; RP11-361K17.2-001; OTTHUMT00000092432.1; NONHSAT009498
Alternative gene names: ENSG00000229841.1; RP11-361K17.2; OTTHUMG00000037874.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.1627 non-coding 
CPAT coding probability 1.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPATA17-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPATA17-2:1
4.0 lnc-SPATA17-2:1
4.1 lnc-SPATA17-2:1
5.0 lnc-SPATA17-2:1
5.1 lnc-DTL-57:1
5.2 lnc-SPATA17-2:1