Transcript: lnc-SPATA1-2:1

Basic information

LNCipedia transcript ID: lnc-SPATA1-2:1 
LNCipedia gene ID: lnc-SPATA1-2
Ensembl Gene ID: ENSG00000284882
Ensembl Transcript ID: ENST00000644618
Location (hg38): chr1:84574585-84583616
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 884 bp
Exons: 3
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000644618.1
Alternative gene names: ENSG00000284882.1; AL359762.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 20.1001 non-coding 
CPAT coding probability 1.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPATA1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-SAMD13-2:3
5.1 lnc-SAMD13-2:3
5.2 lnc-SPATA1-2:1