Transcript: lnc-SPARC-2:4

Basic information

LNCipedia transcript ID: lnc-SPARC-2:4 
LNCipedia gene ID: lnc-SPARC-2
Location (hg38): chr5:151746816-151751713
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4339 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_3040_chr5:151126376-151131274_brain
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.8028 non-coding 
CPAT coding probability 91.73% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SPARC-2:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPARC-2:4
4.0 lnc-SPARC-2:4
4.1 lnc-SPARC-2:4
5.0 lnc-SPARC-2:4
5.1 lnc-FAXDC2-22:4
5.2 lnc-SPARC-2:4