Transcript: lnc-SPANXN4-1:1

Basic information

LNCipedia transcript ID: lnc-SPANXN4-1:1 
LNCipedia gene ID: lnc-SPANXN4-1
Ensembl Gene ID: ENSG00000227303
Ensembl Transcript ID: ENST00000431432
Location (hg38): chrX:143284977-143516803
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 623 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000431432.1; GS1-256O22.5-001; OTTHUMT00000058622.1; NONHSAT138841
Alternative gene names: ENSG00000227303.1; GS1-256O22.5; OTTHUMG00000022584.1; AC239727.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.5599 non-coding 
CPAT coding probability 33.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPANXN4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPANXN4-1:1
4.0 lnc-SPANXN4-1:1
4.1 lnc-SPANXN4-1:1
5.0 lnc-SPANXN4-1:1
5.1 lnc-MAGEA11-105:1
5.2 lnc-SPANXN4-1:1