Transcript: lnc-SPAM1-2:2

Basic information

LNCipedia transcript ID: lnc-SPAM1-2:2 
LNCipedia gene ID: lnc-SPAM1-2
Ensembl Gene ID: ENSG00000241345
Ensembl Transcript ID: ENST00000476892
Location (hg38): chr7:123994631-123995412
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 572 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000476892.1; RP4-630C24.3-001; OTTHUMT00000348428.1; NONHSAT123072
Alternative gene names: ENSG00000241345.1; RP4-630C24.3; OTTHUMG00000157317.1; AC004690.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.5732 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPAM1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPAM1-2:2
4.0 lnc-SPAM1-2:2
4.1 lnc-SPAM1-2:2
5.0 lnc-SPAM1-2:2
5.1 lnc-SPAM1-2:2
5.2 lnc-SPAM1-2:2