Transcript: lnc-SPAG9-1:1

Basic information

LNCipedia transcript ID: lnc-SPAG9-1:1 
LNCipedia gene ID: lnc-SPAG9-1
Ensembl Gene ID: ENSG00000247011
Ensembl Transcript ID: ENST00000501718
Location (hg38): chr17:50934989-50944713
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2054 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000501718; TCONS_00025242; ENST00000501718.2; RP11-700H6.1-001; OTTHUMT00000368558.1; NONHSAT054736
Alternative gene names: ENSG00000247011; XLOC_012521; linc-TOB1; RP11-700H6.1; ENSG00000247011.2; OTTHUMG00000162317.1; AC005920.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.8469 non-coding 
CPAT coding probability 22.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPAG9-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPAG9-1:1
3.1 lnc-SPAG9-1:1
4.0 lnc-SPAG9-1:1
4.1 lnc-SPAG9-1:1
5.0 lnc-SPAG9-1:1
5.1 lnc-ANKRD40-8:1
5.2 lnc-SPAG9-1:1