Transcript: lnc-SPAG16-11:1

Basic information

LNCipedia transcript ID: lnc-SPAG16-11:1 
LNCipedia gene ID: lnc-SPAG16-11
Location (hg38): chr2:213188439-213199520
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 286 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000046496.1|FTMT20700027625.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -248.0962 non-coding 
CPAT coding probability 0.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPAG16-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SPAG16-11:1
5.0 lnc-SPAG16-11:1
5.1 lnc-CPS1-31:1
5.2 lnc-SPAG16-11:1