Transcript: lnc-SPAG16-10:1

Basic information

LNCipedia transcript ID: lnc-SPAG16-10:1 
LNCipedia gene ID: lnc-SPAG16-10
Location (hg38): chr2:212503565-212525499
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 470 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_2023_chr2:213368288-213390223_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -294.3561 non-coding 
CPAT coding probability 1.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPAG16-10:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPAG16-10:1
4.0 lnc-SPAG16-10:1
4.1 lnc-SPAG16-10:1
5.0 lnc-SPAG16-10:1
5.1 lnc-CPS1-19:1
5.2 lnc-SPAG16-10:1