Transcript: lnc-SPAG1-3:4

Basic information

LNCipedia transcript ID: lnc-SPAG1-3:4 
LNCipedia gene ID: lnc-SPAG1-3
Location (hg38): chr8:100492450-100492834
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 267 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014808; NONHSAT128004
Alternative gene names: XLOC_006883; linc-GRHL2-7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -159.8538 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPAG1-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPAG1-3:2
3.1 lnc-SPAG1-3:4
4.0 lnc-SPAG1-3:4
4.1 lnc-SPAG1-3:4
5.0 lnc-SPAG1-3:4
5.1 lnc-CA2-163:8
5.2 lnc-SPAG1-3:4