Transcript: lnc-SPACA9-1:3

Basic information

LNCipedia transcript ID: lnc-SPACA9-1:3 
LNCipedia gene ID: lnc-SPACA9-1
Location (hg38): chr9:132947069-132951560
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 530 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000443690.2
Alternative gene names: ENSG00000233800.3; RP11-295G24.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.5338 non-coding 
CPAT coding probability 4.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPACA9-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C9orf9-1:3
4.1 lnc-GFI1B-1:4
5.0 lnc-GFI1B-1:4
5.1 lnc-RPL7A-11:3
5.2 lnc-SPACA9-1:3