Transcript: lnc-SP3-15:1

Basic information

LNCipedia transcript ID: lnc-SP3-15:1 
LNCipedia gene ID: lnc-SP3-15
Location (hg38): chr2:173529920-173530995
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1076 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA820:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 2.862 non-coding 
CPAT coding probability 96.25% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SP3-15:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SP3-15:1
4.1 lnc-SP3-15:1
5.0 lnc-SP3-15:1
5.1 lnc-OLA1-23:1
5.2 lnc-SP3-15:1