Transcript: lnc-SOX17-4:13

Basic information

LNCipedia transcript ID: lnc-SOX17-4:13 
LNCipedia gene ID: lnc-SOX17-4
Location (hg38): chr8:54559070-54561927
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 666 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000522001.1; RP11-53M11.3-003; OTTHUMT00000378860.1; NONHSAT126640
Alternative gene names: ENSG00000254142.1; RP11-53M11.3; OTTHUMG00000164451.1; ENSG00000254142.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.9781 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOX17-4:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP1-1:3
4.0 lnc-RP1-1:3
4.1 lnc-RP1-1:3
5.0 lnc-RP1-1:3
5.1 lnc-SDCBP-67:13
5.2 lnc-SOX17-4:13