Transcript: lnc-SOX17-4:12

Basic information

LNCipedia transcript ID: lnc-SOX17-4:12 
LNCipedia gene ID: lnc-SOX17-4
Location (hg38): chr8:54558760-54561907
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 787 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: NONHSAT147637; ENST00000518787.2
Alternative gene names: ENSG00000254142.2; RP11-53M11.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.9781 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOX17-4:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP1-1:6
4.0 lnc-RP1-1:6
4.1 lnc-RP1-1:6
5.0 lnc-RP1-1:6
5.1 lnc-SDCBP-67:12
5.2 lnc-SOX17-4:12