Transcript: lnc-SOX11-6:2

Basic information

LNCipedia transcript ID: lnc-SOX11-6:2 
LNCipedia gene ID: lnc-SOX11-6
Location (hg38): chr2:5899429-5902348
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2695 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc010ewu_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.1864 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOX11-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOX11-6:2
4.0 lnc-SOX11-6:2
4.1 lnc-SOX11-6:2
5.0 lnc-SOX11-6:2
5.1 lnc-SNX17-245:2
5.2 lnc-SOX11-6:2