Transcript: lnc-SOX11-1:2

Basic information

LNCipedia transcript ID: lnc-SOX11-1:2 
LNCipedia gene ID: lnc-SOX11-1
Ensembl Gene ID: ENSG00000242540
Ensembl Transcript ID: ENST00000455579
Location (hg38): chr2:5696220-5708095
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1199 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000455579.2
Alternative gene names: ENSG00000242540.2; AC010729.1; AC108025.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -161.4435 non-coding 
CPAT coding probability 10.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOX11-1:2 yes no no no

Available literature

  1. Sun (2015), A potential prognostic long non-coding RNA signature to predict metastasis-free survival of breast cancer patients., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOX11-1:2
4.0 lnc-SOX11-1:2
4.1 lnc-SOX11-1:2
5.0 lnc-SOX11-1:2
5.1 lnc-SNX17-247:3
5.2 lnc-SOX11-1:2