Transcript: lnc-SORCS3-5:5

Basic information

LNCipedia transcript ID: lnc-SORCS3-5:5 
LNCipedia gene ID: lnc-SORCS3-5
Location (hg38): chr10:106184385-106199380
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 683 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00017866; ENST00000426752; ENST00000426752.1; RP11-298H24.1-003; OTTHUMT00000050229.1; NONHSAT016276
Alternative gene names: XLOC_008603; linc-ADD3-8; ENSG00000229775; RP11-298H24.1; ENSG00000229775.1; OTTHUMG00000019016.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.6177 non-coding 
CPAT coding probability 1.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SORCS3-5:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SORCS3-5:5
3.1 lnc-SORCS3-5:5
4.0 lnc-SORCS3-5:5
4.1 lnc-SORCS3-5:5
5.0 lnc-SORCS3-5:5
5.1 lnc-SMC3-48:9
5.2 lnc-SORCS3-5:5