Transcript: lnc-SOD3-6:4

Basic information

LNCipedia transcript ID: lnc-SOD3-6:4 
LNCipedia gene ID: lnc-SOD3-6
Location (hg38): chr4:22997482-23083821
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2435 bp
Exons: 7
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT095769; FPKM1_group_23048_transcript_5
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.6988 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOD3-6:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOD3-6:4
4.0 lnc-SOD3-6:4
4.1 lnc-SOD3-6:4
5.0 lnc-SOD3-6:4
5.1 lnc-USP17L28-88:1
5.2 lnc-SOD3-6:4