Transcript: lnc-SOD3-5:2

Basic information

LNCipedia transcript ID: lnc-SOD3-5:2 
LNCipedia gene ID: lnc-SOD3-5
Location (hg38): chr4:23105160-23123487
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 888 bp
Exons: 5
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT095774; FPKM1_group_23053_transcript_3
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.9813 non-coding 
CPAT coding probability 1.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOD3-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOD3-5:2
4.0 lnc-SOD3-5:2
4.1 lnc-SOD3-5:2
5.0 lnc-SOD3-5:2
5.1 lnc-USP17L28-89:1
5.2 lnc-SOD3-5:2