Transcript: lnc-SOD3-4:1

Basic information

LNCipedia transcript ID: lnc-SOD3-4:1 
LNCipedia gene ID: lnc-SOD3-4
Ensembl Gene ID: ENSG00000250137
Ensembl Transcript ID: ENST00000514290
Location (hg38): chr4:23560923-23768652
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 451 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007491; ENST00000514290.1; RP11-380P13.1-001; OTTHUMT00000360002.1; NONHSAT095780
Alternative gene names: XLOC_003473; linc-SOD3-3; ENSG00000250137.1; RP11-380P13.1; OTTHUMG00000160278.1; AC093607.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -291.066 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOD3-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOD3-3:1
3.1 lnc-SOD3-4:1
4.0 lnc-SOD3-4:1
4.1 lnc-SOD3-4:1
5.0 lnc-SOD3-4:1
5.1 lnc-USP17L28-90:1
5.2 lnc-SOD3-4:1