Transcript: lnc-SOD1-3:4

Basic information

LNCipedia transcript ID: lnc-SOD1-3:4 
LNCipedia gene ID: lnc-SOD1-3
Location (hg38): chr21:31559235-31560487
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 832 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000237594.2|ENST00000433071.2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -526.814 non-coding 
CPAT coding probability 22.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOD1-3:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SOD1-3:4
5.0 lnc-SOD1-3:4
5.1 lnc-OLIG1-29:2
5.2 lnc-SOD1-3:4