Transcript: lnc-SOD1-3:1

Basic information

LNCipedia transcript ID: lnc-SOD1-3:1 
LNCipedia gene ID: lnc-SOD1-3
Location (hg38): chr21:31559224-31560487
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 843 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000433071; ENST00000433071.1; AP000251.2-001; OTTHUMT00000192557.1; NONHSAT081678
Alternative gene names: ENSG00000237594; AP000251.2; ENSG00000237594.1; OTTHUMG00000084870.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -526.814 non-coding 
CPAT coding probability 32.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOD1-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOD1-3:1
3.1 lnc-SOD1-3:1
4.0 lnc-SOD1-3:1
4.1 lnc-SOD1-3:1
5.0 lnc-SOD1-3:1
5.1 lnc-OLIG1-29:1
5.2 lnc-SOD1-3:1