Transcript: lnc-SOCS6-2:1

Basic information

LNCipedia transcript ID: lnc-SOCS6-2:1 
LNCipedia gene ID: lnc-SOCS6-2
Location (hg38): chr18:70205938-70207049
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 566 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026355; NONHSAT059765
Alternative gene names: XLOC_012708; linc-SOCS6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -206.5189 non-coding 
CPAT coding probability 1.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOCS6-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOCS6-2:1
3.1 lnc-SOCS6-2:1
4.0 lnc-SOCS6-2:1
4.1 lnc-SOCS6-2:1
5.0 lnc-SOCS6-2:1
5.1 lnc-KCNG2-93:1
5.2 lnc-SOCS6-2:1