Transcript: lnc-SOCS5-4:5

Basic information

LNCipedia transcript ID: lnc-SOCS5-4:5 
LNCipedia gene ID: lnc-SOCS5-4
RefSeq ID: NR_034099
Location (hg38): chr2:46816668-46822660
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1043 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_034099; NR_034099.1
Alternative gene names: LINC01118


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.3157 non-coding 
CPAT coding probability 48.78% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SOCS5-4:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOCS5-2:5
4.0 lnc-AC016722.2.1-1:6
4.1 lnc-AC016722.2.1-1:6
5.0 lnc-AC016722.2.1-1:6
5.1 lnc-TTC7A-3:5
5.2 lnc-SOCS5-4:5