Transcript: lnc-SOBP-4:1

Basic information

LNCipedia transcript ID: lnc-SOBP-4:1 
LNCipedia gene ID: lnc-SOBP-4
Location (hg38): chr6:107275559-107301703
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2344 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000085255.1|FTMT22300039875.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 29.1639 non-coding 
CPAT coding probability 14.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOBP-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SOBP-4:1
5.0 lnc-SOBP-4:1
5.1 lnc-SMPD2-39:1
5.2 lnc-SOBP-4:1