Transcript: lnc-SNX5-1:1

Basic information

LNCipedia transcript ID: lnc-SNX5-1:1 
LNCipedia gene ID: lnc-SNX5-1
Ensembl Gene ID: ENSG00000233625
Ensembl Transcript ID: ENST00000425405
Location (hg38): chr20:17887363-17888160
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 632 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028010; ENST00000425405; ENST00000425405.1; RP5-905G11.3-001; OTTHUMT00000078135.1; NONHSAT078774
Alternative gene names: XLOC_013665; linc-RRBP1; ENSG00000233625; RP5-905G11.3; ENSG00000233625.1; OTTHUMG00000031951.1; AL035045.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.7127 non-coding 
CPAT coding probability 9.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX5-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SNX5-1:1
3.1 lnc-SNX5-1:1
4.0 lnc-SNX5-1:1
4.1 lnc-SNX5-1:1
5.0 lnc-SNX5-1:1
5.1 lnc-RRBP1-8:3
5.2 lnc-SNX5-1:1