Transcript: lnc-SNX33-3:2

Basic information

LNCipedia transcript ID: lnc-SNX33-3:2 
LNCipedia gene ID: lnc-SNX33-3
Ensembl Gene ID: ENSG00000203392
Ensembl Transcript ID: ENST00000435356
Location (hg38): chr15:75678548-75680752
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2205 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000435356.2
Alternative gene names: ENSG00000203392.3; CTD-2026K11.6; AC105020.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -27.9352 non-coding 
CPAT coding probability 4.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX33-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC105020.1-3:1
4.1 lnc-AC105020.1-3:1
5.0 lnc-AC105020.1-3:1
5.1 lnc-ISL2-13:1
5.2 lnc-SNX33-3:2