Transcript: lnc-SNX17-1:5

Basic information

LNCipedia transcript ID: lnc-SNX17-1:5 
LNCipedia gene ID: lnc-SNX17-1
Location (hg38): chr2:27356288-27360256
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3018 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000234072.1|ENST00000447070.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 77.2978 coding 
CPAT coding probability 14.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SNX17-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SNX17-1:5
5.0 lnc-SNX17-1:5
5.1 lnc-SNX17-1:5
5.2 lnc-SNX17-1:5