Transcript: lnc-SNX10-87:2

Basic information

LNCipedia transcript ID: lnc-SNX10-87:2 
LNCipedia gene ID: lnc-SNX10-87
Ensembl Gene ID: ENSG00000233760
Ensembl Transcript ID: ENST00000457000
Location (hg38): chr7:26551839-26555114
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 576 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000457000; ENST00000457000.1; AC004947.2-003; OTTHUMT00000328279.1; NONHSAT119651
Alternative gene names: ENSG00000233760; AC004947.2; ENSG00000233760.1; OTTHUMG00000152862.1; AC004947.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -178.3149 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX10-87:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C7orf71-1:2
3.1 lnc-C7orf71-1:2
4.0 lnc-C7orf71-1:2
4.1 lnc-C7orf71-1:2
5.0 lnc-C7orf71-1:2
5.1 lnc-SNX10-12:2
5.2 lnc-SNX10-87:2