Transcript: lnc-SNRPN-8:96

Basic information

LNCipedia transcript ID: lnc-SNRPN-8:96 
LNCipedia gene ID: lnc-SNRPN-8
Location (hg38): chr15:24997954-24999144
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 708 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT040982
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -165.1 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNRPN-8:96 no no no no

Available literature

  1. Qi (2017), Long non-coding RNA SNHG14 promotes microglia activation by regulating miR-145-5p/PLA2G4A in cerebral infarction., Neuroscience
  2. Kanduri (2016), Long noncoding RNAs: Lessons from genomic imprinting., Biochim. Biophys. Acta
  3. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  4. Zhao (2015), Identification of cancer-related lncRNAs through integrating genome, regulome and transcriptome features., Mol Biosyst
  5. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther
  6. Murrell (2014), Cross-talk between imprinted loci in Prader-Willi syndrome., Nat. Genet.
  7. Stelzer (2014), The noncoding RNA IPW regulates the imprinted DLK1-DIO3 locus in an induced pluripotent stem cell model of Prader-Willi syndrome., Nat. Genet.
  8. Powell (2013), A Prader-Willi locus lncRNA cloud modulates diurnal genes and energy expenditure., Hum. Mol. Genet.
  9. Clark (2012), Genome-wide analysis of long noncoding RNA stability., Genome Res.
  10. Vitali (2010), Long nuclear-retained non-coding RNAs and allele-specific higher-order chromatin organization at imprinted snoRNA gene arrays., J. Cell. Sci.
  11. Landers (2004), Regulation of the large (approximately 1000 kb) imprinted murine Ube3a antisense transcript by alternative exons upstream of Snurf/Snrpn., Nucleic Acids Res.
  12. Runte (2001), The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A., Hum. Mol. Genet.
  13. Wevrick (1997), An imprinted mouse transcript homologous to the human imprinted in Prader-Willi syndrome (IPW) gene., Hum. Mol. Genet.
  14. Rachmilewitz (1996), Characterization of the imprinted IPW gene: allelic expression in normal and tumorigenic human tissues., Oncogene
  15. Wevrick (1994), Identification of a novel paternally expressed gene in the Prader-Willi syndrome region., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNURF-1:19
4.0 lnc-SNURF-1:19
4.1 lnc-SNURF-1:19
5.0 lnc-SNURF-1:19
5.1 lnc-SNRPN-8:10
5.2 lnc-SNRPN-8:96