Transcript: lnc-SNRPN-8:108

Basic information

LNCipedia transcript ID: lnc-SNRPN-8:108 
HGNC Gene Symbol: lnc-SNRPN-8    
HGNC Full Gene Name: Prader Willi/Angelman region RNA 6
Ensembl Gene ID: ENSG00000257151
Ensembl Transcript ID: ENST00000552334
Location (hg38): chr15:25031873-25036490
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4618 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000552334; ENST00000552334.1; RP11-701H24.2-001; OTTHUMT00000408286.1; NONHSAT040995
Alternative gene names: ENSG00000257151; RP11-701H24.2; ENSG00000257151.1; OTTHUMG00000170276.1; PWAR6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.8078 non-coding 
CPAT coding probability 1.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNRPN-8:108 no no no no

Available literature

  1. Qi (2017), Long non-coding RNA SNHG14 promotes microglia activation by regulating miR-145-5p/PLA2G4A in cerebral infarction., Neuroscience
  2. Kanduri (2016), Long noncoding RNAs: Lessons from genomic imprinting., Biochim. Biophys. Acta
  3. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  4. Zhao (2015), Identification of cancer-related lncRNAs through integrating genome, regulome and transcriptome features., Mol Biosyst
  5. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther
  6. Murrell (2014), Cross-talk between imprinted loci in Prader-Willi syndrome., Nat. Genet.
  7. Stelzer (2014), The noncoding RNA IPW regulates the imprinted DLK1-DIO3 locus in an induced pluripotent stem cell model of Prader-Willi syndrome., Nat. Genet.
  8. Powell (2013), A Prader-Willi locus lncRNA cloud modulates diurnal genes and energy expenditure., Hum. Mol. Genet.
  9. Clark (2012), Genome-wide analysis of long noncoding RNA stability., Genome Res.
  10. Vitali (2010), Long nuclear-retained non-coding RNAs and allele-specific higher-order chromatin organization at imprinted snoRNA gene arrays., J. Cell. Sci.
  11. Landers (2004), Regulation of the large (approximately 1000 kb) imprinted murine Ube3a antisense transcript by alternative exons upstream of Snurf/Snrpn., Nucleic Acids Res.
  12. Runte (2001), The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A., Hum. Mol. Genet.
  13. Wevrick (1997), An imprinted mouse transcript homologous to the human imprinted in Prader-Willi syndrome (IPW) gene., Hum. Mol. Genet.
  14. Rachmilewitz (1996), Characterization of the imprinted IPW gene: allelic expression in normal and tumorigenic human tissues., Oncogene
  15. Wevrick (1994), Identification of a novel paternally expressed gene in the Prader-Willi syndrome region., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SNURF-1:6
3.1 lnc-SNURF-1:11
4.0 lnc-SNURF-1:11
4.1 lnc-SNURF-1:11
5.0 lnc-SNURF-1:11
5.1 lnc-SNRPN-8:22
5.2 lnc-SNRPN-8:108