Transcript: lnc-SMN2-3:1

Basic information

LNCipedia transcript ID: lnc-SMN2-3:1 
LNCipedia gene ID: lnc-SMN2-3
Location (hg38): chr5:70409766-70413399
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3634 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1776:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 13.3109 non-coding 
CPAT coding probability 0.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMN2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SMN2-3:1
4.1 lnc-SMN2-3:1
5.0 lnc-SMN2-3:1
5.1 lnc-BDP1-16:1
5.2 lnc-SMN2-3:1