Transcript: lnc-SMLR1-2:2

Basic information

LNCipedia transcript ID: lnc-SMLR1-2:2 
LNCipedia gene ID: lnc-SMLR1-2
Ensembl Gene ID: ENSG00000229923
Ensembl Transcript ID: ENST00000454262
Location (hg38): chr6:130697312-130697778
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 334 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000454262.2
Alternative gene names: ENSG00000229923.2; RP11-102N11.1; AL583803.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -275.8832 non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMLR1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP3-324N14.2.1-2:2
4.0 lnc-RP3-324N14.2.1-2:2
4.1 lnc-RP3-324N14.2.1-2:2
5.0 lnc-RP3-324N14.2.1-2:2
5.1 lnc-TBPL1-61:2
5.2 lnc-SMLR1-2:2