Transcript: lnc-SMLR1-2:1

Basic information

LNCipedia transcript ID: lnc-SMLR1-2:1 
LNCipedia gene ID: lnc-SMLR1-2
Location (hg38): chr6:130697312-130697778
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 335 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011369; ENST00000454262; ENST00000454262.1; RP11-102N11.1-001; OTTHUMT00000042202.1; NONHSAT114906
Alternative gene names: XLOC_005462; linc-LOC285733; ENSG00000229923; RP11-102N11.1; ENSG00000229923.1; OTTHUMG00000015558.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -275.8832 non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMLR1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP3-324N14.2.1-2:1
3.1 lnc-RP3-324N14.2.1-2:1
4.0 lnc-RP3-324N14.2.1-2:1
4.1 lnc-RP3-324N14.2.1-2:1
5.0 lnc-RP3-324N14.2.1-2:1
5.1 lnc-TBPL1-61:1
5.2 lnc-SMLR1-2:1