Transcript: lnc-SMIM37-1:5

Basic information

LNCipedia transcript ID: lnc-SMIM37-1:5 
LNCipedia gene ID: lnc-SMIM37-1
Location (hg38): chr2:110212215-110217788
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1260 bp
Exons: 6
Sources: NONCODE v4
Alternative transcript names: NONHSAT073175
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 562.7176 coding 
CPAT coding probability 58.56% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMIM37-1:5 no no no no

Available literature

  1. Crappé (2013), Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs., BMC Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NPHP1-1:6
4.0 lnc-NPHP1-1:6
4.1 lnc-NPHP1-1:6
5.0 lnc-NPHP1-1:6
5.1 lnc-EN1-92:5
5.2 lnc-SMIM37-1:5